Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling

Sushma Reddy; Rebecca T. Kimball; Akanksha Pandey; Peter A. Hosner; Peter A. Hosner; Michael J. Braun; Michael J. Braun; Shannon J. Hackett; Kin-Lan Han; John Harshman; Christopher J. Huddleston; Sarah Kingston; Sarah Kingston; Sarah Kingston; Ben D. Marks; Kathleen J. Miglia; William S. Moore; Frederick H. Sheldon; Christopher C. Witt; Tamaki Yuri; Tamaki Yuri; Edward L. Braun

doi:10.1093/sysbio/syx041

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling

Sushma Reddy
, Rebecca T. Kimball
, Akanksha Pandey
, Peter A. Hosner
, Peter A. Hosner
, Michael J. Braun
, Michael J. Braun
, Shannon J. Hackett
, Kin-Lan Han
, John Harshman
, Christopher J. Huddleston
, Sarah Kingston
, Sarah Kingston
, Sarah Kingston
, Ben D. Marks
, Kathleen J. Miglia
, William S. Moore
, Frederick H. Sheldon
, Christopher C. Witt
, Tamaki Yuri

Tamaki Yuri, Edward L. Braun

Department of Biology

University of Florida
Florida Museum of Natural History
University of Maryland, College Park
National Museum of Natural History
Field Museum of Natural History
4869 Pepperwood Way, San Jose, CA 95124, USA
Bowdoin College
Wayne State University
Houston Museum of Natural Science
Department of Biology and Museum of Southwestern Biology, University 15 of New Mexico, Albuquerque, New Mexico 87131, USA
University of Oklahoma

Research output: Contribution to journal › Article › peer-review

Original language	American English
Journal	Systematic Biology
Volume	66
Issue number	5
DOIs	https://doi.org/10.1093/sysbio/syx041
State	Published - Sep 1 2017

Disciplines

Biology
Zoology

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Reddy, S., Kimball, R. T., Pandey, A., Hosner, P. A., Hosner, P. A., Braun, M. J., Braun, M. J., Hackett, S. J., Han, K.-L., Harshman, J., Huddleston, C. J., Kingston, S., Kingston, S., Kingston, S., Marks, B. D., Miglia, K. J., Moore, W. S., Sheldon, F. H., Witt, C. C., ... Braun, E. L. (2017). Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling. Systematic Biology, 66(5). https://doi.org/10.1093/sysbio/syx041

Reddy, S, Kimball, RT, Pandey, A, Hosner, PA, Hosner, PA, Braun, MJ, Braun, MJ, Hackett, SJ, Han, K-L, Harshman, J, Huddleston, CJ, Kingston, S, Kingston, S, Kingston, S, Marks, BD, Miglia, KJ, Moore, WS, Sheldon, FH, Witt, CC, Yuri, T, Yuri, T & Braun, EL 2017, 'Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling', Systematic Biology, vol. 66, no. 5. https://doi.org/10.1093/sysbio/syx041

@article{a1eebb1b8581484c9dc57dc76ff99baa,

title = "Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling",

author = "Sushma Reddy and Kimball, \{Rebecca T.\} and Akanksha Pandey and Hosner, \{Peter A.\} and Hosner, \{Peter A.\} and Braun, \{Michael J.\} and Braun, \{Michael J.\} and Hackett, \{Shannon J.\} and Kin-Lan Han and John Harshman and Huddleston, \{Christopher J.\} and Sarah Kingston and Sarah Kingston and Sarah Kingston and Marks, \{Ben D.\} and Miglia, \{Kathleen J.\} and Moore, \{William S.\} and Sheldon, \{Frederick H.\} and Witt, \{Christopher C.\} and Tamaki Yuri and Tamaki Yuri and Braun, \{Edward L.\}",

note = "Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life. However, it has become clear that analyses of these large genomic data sets can also result in conflicting estimates of phylogeny.",

year = "2017",

month = sep,

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doi = "10.1093/sysbio/syx041",

language = "American English",

volume = "66",

journal = "Systematic Biology",

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AU - Reddy, Sushma

AU - Kimball, Rebecca T.

AU - Pandey, Akanksha

AU - Hosner, Peter A.

AU - Braun, Michael J.

AU - Hackett, Shannon J.

AU - Han, Kin-Lan

AU - Harshman, John

AU - Huddleston, Christopher J.

AU - Kingston, Sarah

AU - Marks, Ben D.

AU - Miglia, Kathleen J.

AU - Moore, William S.

AU - Sheldon, Frederick H.

AU - Witt, Christopher C.

AU - Yuri, Tamaki

AU - Braun, Edward L.

N1 - Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life. However, it has become clear that analyses of these large genomic data sets can also result in conflicting estimates of phylogeny.

PY - 2017/9/1

Y1 - 2017/9/1

UR - https://academic.oup.com/sysbio/article/66/5/857/3091102

U2 - 10.1093/sysbio/syx041

DO - 10.1093/sysbio/syx041

M3 - Article

SN - 1076-836X

VL - 66

JO - Systematic Biology

JF - Systematic Biology

IS - 5

ER -

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling

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